Detailed information of SNP:
|
SNP ID:
sf1215218733(Gbrowse)
Chromosome: chr12 Position: 15218733 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 83.68% | 16.32% |
| All Indica | 790 | 78.23% | 21.77% |
| All Japonica | 496 | 90.32% | 9.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 79.57% | 20.43% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 207 | 68.12% | 31.88% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215218733 | T->C | INTERGENIC | None |