Detailed information of SNP:
|
SNP ID:
sf1215219382(Gbrowse)
Chromosome: chr12 Position: 15219382 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 92.49% | 7.51% |
| All Indica | 781 | 87.20% | 12.80% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 86.45% | 13.55% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 206 | 80.58% | 19.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215219382 | C->A | INTERGENIC | None |