Detailed information of SNP:
|
SNP ID:
sf1215221133(Gbrowse)
Chromosome: chr12 Position: 15221133 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 56.97% | 43.03% |
| All Indica | 771 | 45.65% | 54.35% |
| All Japonica | 494 | 82.19% | 17.81% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 364 | 27.47% | 72.53% |
| Indica II | 203 | 72.41% | 27.59% |
| Indica Intermediate | 204 | 51.47% | 48.53% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 92 | 54.35% | 45.65% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215221133 | A->G | LOC_Os12g26140(LOC_Os12g26140.1) | Non-Synonymous SNP |