Detailed information of SNP:
|
SNP ID:
sf1215222732(Gbrowse)
Chromosome: chr12 Position: 15222732 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 76.03% | 23.97% |
| All Indica | 795 | 72.83% | 27.17% |
| All Japonica | 492 | 77.64% | 22.36% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 332 | 82.23% | 17.77% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215222732 | A->G | LOC_Os12g26140(LOC_Os12g26140.1) | INTRON |