Detailed information of SNP:
|
SNP ID:
sf1215222855(Gbrowse)
Chromosome: chr12 Position: 15222855 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 98.50% | 1.50% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 487 | 97.74% | 2.26% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 91.11% | 8.89% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215222855 | G->A | LOC_Os12g26140(LOC_Os12g26140.1) | Non-Synonymous SNP |