Detailed information of SNP:
|
SNP ID:
sf1215224156(Gbrowse)
Chromosome: chr12 Position: 15224156 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 96.00% | 4.00% |
| All Indica | 791 | 98.86% | 1.14% |
| All Japonica | 478 | 95.61% | 4.39% |
| Aus | 56 | 71.43% | 28.57% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 207 | 98.55% | 1.45% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 326 | 97.55% | 2.45% |
| Tropical Japonica | 87 | 88.51% | 11.49% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215224156 | A->T | LOC_Os12g26140(LOC_Os12g26140.1) | Non-Synonymous SNP |