Detailed information of SNP:
|
SNP ID:
sf1215224818(Gbrowse)
Chromosome: chr12 Position: 15224818 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 59.53% | 40.47% |
| All Indica | 743 | 83.45% | 16.55% |
| All Japonica | 486 | 18.52% | 81.48% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 339 | 80.53% | 19.47% |
| Indica II | 205 | 88.29% | 11.71% |
| Indica Intermediate | 199 | 83.42% | 16.58% |
| Temperate Japonica | 333 | 7.21% | 92.79% |
| Tropical Japonica | 87 | 56.32% | 43.68% |
| Japonica Intermediate | 66 | 25.76% | 74.24% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215224818 | A->T | LOC_Os12g26140(LOC_Os12g26140.1) | Non-Synonymous SNP |