Detailed information of SNP:
|
SNP ID:
sf1215230365(Gbrowse)
Chromosome: chr12 Position: 15230365 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 91.58% | 8.42% |
| All Indica | 782 | 87.21% | 12.79% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 205 | 71.22% | 28.78% |
| Indica Intermediate | 206 | 85.44% | 14.56% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215230365 | A->G | LOC_Os12g26150(LOC_Os12g26150.1) | INTRON |