Detailed information of SNP:
|
SNP ID:
sf1215233733(Gbrowse)
Chromosome: chr12 Position: 15233733 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 82.57% | 17.43% |
| All Indica | 793 | 74.02% | 25.98% |
| All Japonica | 495 | 93.74% | 6.26% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 90.05% | 9.95% |
| Indica II | 210 | 49.05% | 50.95% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215233733 | A->G | LOC_Os12g26150(LOC_Os12g26150.1) | Non-Synonymous SNP |