Detailed information of SNP:
|
SNP ID:
sf1215234670(Gbrowse)
Chromosome: chr12 Position: 15234670 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 83.20% | 16.80% |
| All Indica | 780 | 74.23% | 25.77% |
| All Japonica | 495 | 96.97% | 3.03% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 370 | 71.62% | 28.38% |
| Indica II | 202 | 80.69% | 19.31% |
| Indica Intermediate | 208 | 72.60% | 27.40% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215234670 | C->A | INTERGENIC | None |