Detailed information of SNP:
|
SNP ID:
sf1215235263(Gbrowse)
Chromosome: chr12 Position: 15235263 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1276 | 58.70% | 41.30% |
| All Indica | 676 | 32.25% | 67.75% |
| All Japonica | 492 | 90.65% | 9.35% |
| Aus | 56 | 87.50% | 12.50% |
| Indica I | 294 | 42.52% | 57.48% |
| Indica II | 201 | 21.89% | 78.11% |
| Indica Intermediate | 181 | 27.07% | 72.93% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 91 | 64.84% | 35.16% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215235263 | A->G | INTERGENIC | None |