Detailed information of SNP:
|
SNP ID:
sf1215264162(Gbrowse)
Chromosome: chr12 Position: 15264162 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 87.69% | 12.31% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 494 | 85.22% | 14.78% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215264162 | A->C | LOC_Os12g26190(LOC_Os12g26190.1) | Non-Synonymous SNP |