Detailed information of SNP:
|
SNP ID:
sf1215268342(Gbrowse)
Chromosome: chr12 Position: 15268342 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 52.12% | 47.88% |
| All Indica | 740 | 76.49% | 23.51% |
| All Japonica | 473 | 16.49% | 83.51% |
| Aus | 58 | 20.69% | 79.31% |
| Indica I | 347 | 79.25% | 20.75% |
| Indica II | 200 | 73.00% | 27.00% |
| Indica Intermediate | 193 | 75.13% | 24.87% |
| Temperate Japonica | 333 | 7.81% | 92.19% |
| Tropical Japonica | 78 | 51.28% | 48.72% |
| Japonica Intermediate | 62 | 19.35% | 80.65% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215268342 | A->G | LOC_Os12g26190(LOC_Os12g26190.1) | INTRON |