Detailed information of SNP:
|
SNP ID:
sf1215268777(Gbrowse)
Chromosome: chr12 Position: 15268777 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 93.92% | 6.08% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 478 | 84.31% | 15.69% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 321 | 87.23% | 12.77% |
| Tropical Japonica | 91 | 75.82% | 24.18% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215268777 | T->C | LOC_Os12g26190(LOC_Os12g26190.1) | INTRON |
| sf1215268777 | T->C | LOC_Os12g26190(LOC_Os12g26190.1) | SNPs that disrupt splice sites |