Detailed information of SNP:
|
SNP ID:
sf1215269157(Gbrowse)
Chromosome: chr12 Position: 15269157 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 95.10% | 4.90% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 493 | 95.54% | 4.46% |
| Aus | 59 | 37.29% | 62.71% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215269157 | G->A | LOC_Os12g26190(LOC_Os12g26190.1) | Non-Synonymous SNP |