Detailed information of SNP:
|
SNP ID:
sf1215269596(Gbrowse)
Chromosome: chr12 Position: 15269596 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 93.14% | 6.86% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 495 | 89.70% | 10.30% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215269596 | A->C | LOC_Os12g26190(LOC_Os12g26190.1) | Non-Synonymous SNP |