Detailed information of SNP:
|
SNP ID:
sf1215270368(Gbrowse)
Chromosome: chr12 Position: 15270368 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 50.00% | 50.00% |
| All Indica | 775 | 63.35% | 36.65% |
| All Japonica | 497 | 20.72% | 79.28% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 84.59% | 15.41% |
| Indica II | 202 | 27.23% | 72.77% |
| Indica Intermediate | 203 | 60.59% | 39.41% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215270368 | C->T | INTERGENIC | None |