Detailed information of SNP:
|
SNP ID:
sf1215274449(Gbrowse)
Chromosome: chr12 Position: 15274449 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 83.72% | 16.28% |
| All Indica | 786 | 75.57% | 24.43% |
| All Japonica | 451 | 96.67% | 3.33% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 202 | 47.52% | 52.48% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 319 | 99.37% | 0.63% |
| Tropical Japonica | 72 | 86.11% | 13.89% |
| Japonica Intermediate | 60 | 95.00% | 5.00% |
| Group VI/Aromatic | 7 | 71.43% | 28.57% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215274449 | T->C | LOC_Os12g26204(LOC_Os12g26204.1) | INTRON |