Detailed information of SNP:
|
SNP ID:
sf1215276505(Gbrowse)
Chromosome: chr12 Position: 15276505 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 88.70% | 11.30% |
| All Indica | 788 | 81.35% | 18.65% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 207 | 60.39% | 39.61% |
| Indica Intermediate | 208 | 78.37% | 21.63% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215276505 | A->G | LOC_Os12g26204(LOC_Os12g26204.1) | INTRON |