Detailed information of SNP:
|
SNP ID:
sf1215280664(Gbrowse)
Chromosome: chr12 Position: 15280664 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 76.92% | 23.08% |
| All Indica | 778 | 73.91% | 26.09% |
| All Japonica | 496 | 91.33% | 8.67% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 365 | 81.10% | 18.90% |
| Indica II | 210 | 67.14% | 32.86% |
| Indica Intermediate | 203 | 67.98% | 32.02% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215280664 | A->G | INTERGENIC | None |