Detailed information of SNP:
|
SNP ID:
sf1215281688(Gbrowse)
Chromosome: chr12 Position: 15281688 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1330 | 97.89% | 2.11% |
| All Indica | 717 | 97.21% | 2.79% |
| All Japonica | 492 | 98.58% | 1.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 303 | 96.04% | 3.96% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 201 | 97.01% | 2.99% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215281688 | C->G | LOC_Os12g26220(LOC_Os12g26220.1) | UTR_3_PRIME |