Detailed information of SNP:
|
SNP ID:
sf1215301476(Gbrowse)
Chromosome: chr12 Position: 15301476 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 60.04% | 39.96% |
| All Indica | 787 | 82.47% | 17.53% |
| All Japonica | 496 | 19.96% | 80.04% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 369 | 74.25% | 25.75% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 206 | 83.98% | 16.02% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215301476 | C->G | INTERGENIC | None |