Detailed information of SNP:
|
SNP ID:
sf1215302325(Gbrowse)
Chromosome: chr12 Position: 15302325 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 60.23% | 39.77% |
| All Indica | 785 | 82.93% | 17.07% |
| All Japonica | 496 | 20.16% | 79.84% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 367 | 74.93% | 25.07% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 206 | 83.98% | 16.02% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215302325 | T->C | LOC_Os12g26260(LOC_Os12g26260.1) | Synonymous |