Detailed information of SNP:



SNP ID: sf1215303469(Gbrowse)

Chromosome: chr12

Position: 15303469
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1374 96.36% 3.64%
All Indica756 93.39% 6.61%
All Japonica497 100.00% 0.00%
Aus66 100.00% 0.00%
Indica I343 90.67% 9.33%
Indica II209 97.13% 2.87%
Indica Intermediate204 94.12% 5.88%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1215303469 C->T LOC_Os12g26260(LOC_Os12g26260.1) Non-Synonymous SNP