Detailed information of SNP:
|
SNP ID:
sf1215303830(Gbrowse)
Chromosome: chr12 Position: 15303830 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 85.23% | 14.77% |
| All Indica | 769 | 86.48% | 13.52% |
| All Japonica | 492 | 86.18% | 13.82% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 357 | 78.71% | 21.29% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 202 | 94.06% | 5.94% |
| Temperate Japonica | 334 | 91.92% | 8.08% |
| Tropical Japonica | 92 | 72.83% | 27.17% |
| Japonica Intermediate | 66 | 75.76% | 24.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215303830 | A->G | LOC_Os12g26260(LOC_Os12g26260.1) | INTRON |