Detailed information of SNP:
|
SNP ID:
sf1215310262(Gbrowse)
Chromosome: chr12 Position: 15310262 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.12% | 47.88% |
| All Indica | 798 | 66.79% | 33.21% |
| All Japonica | 497 | 20.32% | 79.68% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215310262 | A->C | INTERGENIC | None |