Detailed information of SNP:
|
SNP ID:
sf1215329508(Gbrowse)
Chromosome: chr12 Position: 15329508 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 96.60% | 3.40% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 492 | 95.93% | 4.07% |
| Aus | 45 | 48.89% | 51.11% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215329508 | C->T | LOC_Os12g26290(LOC_Os12g26290.2) | INTRON |
| sf1215329508 | C->T | LOC_Os12g26290(LOC_Os12g26290.3) | INTRON |
| sf1215329508 | C->T | LOC_Os12g26290(LOC_Os12g26290.5) | INTRON |
| sf1215329508 | C->T | LOC_Os12g26290(LOC_Os12g26290.6) | INTRON |
| sf1215329508 | C->T | LOC_Os12g26290(LOC_Os12g26290.4) | INTRON |
| sf1215329508 | C->T | LOC_Os12g26290(LOC_Os12g26290.1) | INTRON |