Detailed information of SNP:
|
SNP ID:
sf1215334915(Gbrowse)
Chromosome: chr12 Position: 15334915 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 82.80% | 17.20% |
| All Indica | 799 | 80.85% | 19.15% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215334915 | C->T | LOC_Os12g26290(LOC_Os12g26290.2) | INTRON |
| sf1215334915 | C->T | LOC_Os12g26290(LOC_Os12g26290.3) | INTRON |
| sf1215334915 | C->T | LOC_Os12g26290(LOC_Os12g26290.5) | INTRON |
| sf1215334915 | C->T | LOC_Os12g26290(LOC_Os12g26290.6) | INTRON |
| sf1215334915 | C->T | LOC_Os12g26290(LOC_Os12g26290.4) | INTRON |
| sf1215334915 | C->T | LOC_Os12g26290(LOC_Os12g26290.1) | INTRON |