Detailed information of SNP:
|
SNP ID:
sf1215335141(Gbrowse)
Chromosome: chr12 Position: 15335141 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 96.61% | 3.39% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 495 | 95.35% | 4.65% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215335141 | G->A | LOC_Os12g26290(LOC_Os12g26290.2) | INTRON |
| sf1215335141 | G->A | LOC_Os12g26290(LOC_Os12g26290.3) | INTRON |
| sf1215335141 | G->A | LOC_Os12g26290(LOC_Os12g26290.5) | INTRON |
| sf1215335141 | G->A | LOC_Os12g26290(LOC_Os12g26290.6) | INTRON |
| sf1215335141 | G->A | LOC_Os12g26290(LOC_Os12g26290.4) | INTRON |
| sf1215335141 | G->A | LOC_Os12g26290(LOC_Os12g26290.1) | INTRON |