Detailed information of SNP:
|
SNP ID:
sf1215336811(Gbrowse)
Chromosome: chr12 Position: 15336811 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 63.95% | 36.05% |
| All Indica | 757 | 86.39% | 13.61% |
| All Japonica | 496 | 23.59% | 76.41% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 359 | 93.31% | 6.69% |
| Indica II | 195 | 74.87% | 25.13% |
| Indica Intermediate | 203 | 85.22% | 14.78% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215336811 | T->C | LOC_Os12g26290(LOC_Os12g26290.2) | INTRON |
| sf1215336811 | T->C | LOC_Os12g26290(LOC_Os12g26290.3) | INTRON |
| sf1215336811 | T->C | LOC_Os12g26290(LOC_Os12g26290.5) | INTRON |
| sf1215336811 | T->C | LOC_Os12g26290(LOC_Os12g26290.6) | INTRON |
| sf1215336811 | T->C | LOC_Os12g26290(LOC_Os12g26290.4) | INTRON |
| sf1215336811 | T->C | LOC_Os12g26290(LOC_Os12g26290.1) | INTRON |