Detailed information of SNP:
|
SNP ID:
sf1215341161(Gbrowse)
Chromosome: chr12 Position: 15341161 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.14% | 42.86% |
| All Indica | 795 | 74.21% | 25.79% |
| All Japonica | 496 | 22.18% | 77.82% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 39.15% | 60.85% |
| Indica Intermediate | 208 | 68.27% | 31.73% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215341161 | T->C | INTERGENIC | None |