Detailed information of SNP:
|
SNP ID:
sf1215349815(Gbrowse)
Chromosome: chr12 Position: 15349815 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 94.05% | 5.95% |
| All Indica | 787 | 94.54% | 5.46% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 59 | 50.85% | 49.15% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215349815 | T->A | LOC_Os12g26310(LOC_Os12g26310.1) | Synonymous |