Detailed information of SNP:
|
SNP ID:
sf1215350168(Gbrowse)
Chromosome: chr12 Position: 15350168 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 93.60% | 6.40% |
| All Indica | 778 | 94.47% | 5.53% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 62 | 46.77% | 53.23% |
| Indica I | 365 | 93.15% | 6.85% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215350168 | T->G | LOC_Os12g26310(LOC_Os12g26310.1) | Non-Synonymous SNP |