Detailed information of SNP:
|
SNP ID:
sf1215350181(Gbrowse)
Chromosome: chr12 Position: 15350181 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 94.33% | 5.67% |
| All Indica | 785 | 94.65% | 5.35% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 59 | 52.54% | 47.46% |
| Indica I | 371 | 94.07% | 5.93% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215350181 | C->A | LOC_Os12g26310(LOC_Os12g26310.1) | Synonymous |