Detailed information of SNP:
|
SNP ID:
sf1215351391(Gbrowse)
Chromosome: chr12 Position: 15351391 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 50.29% | 49.71% |
| All Indica | 773 | 73.61% | 26.39% |
| All Japonica | 494 | 10.93% | 89.07% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 363 | 80.72% | 19.28% |
| Indica II | 206 | 68.93% | 31.07% |
| Indica Intermediate | 204 | 65.69% | 34.31% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 92 | 38.04% | 61.96% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215351391 | A->G | LOC_Os12g26310(LOC_Os12g26310.1) | INTRON |