Detailed information of SNP:
|
SNP ID:
sf1215351555(Gbrowse)
Chromosome: chr12 Position: 15351555 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 52.90% | 47.10% |
| All Indica | 759 | 27.40% | 72.60% |
| All Japonica | 490 | 91.84% | 8.16% |
| Aus | 64 | 57.81% | 42.19% |
| Indica I | 361 | 23.27% | 76.73% |
| Indica II | 198 | 33.84% | 66.16% |
| Indica Intermediate | 200 | 28.50% | 71.50% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215351555 | G->A | LOC_Os12g26310(LOC_Os12g26310.1) | INTRON |