Detailed information of SNP:
|
SNP ID:
sf1215351681(Gbrowse)
Chromosome: chr12 Position: 15351681 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 58.69% | 41.31% |
| All Indica | 789 | 84.79% | 15.21% |
| All Japonica | 496 | 12.10% | 87.90% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 84.99% | 15.01% |
| Indica II | 210 | 87.14% | 12.86% |
| Indica Intermediate | 206 | 82.04% | 17.96% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215351681 | A->G | LOC_Os12g26310(LOC_Os12g26310.1) | INTRON |