Detailed information of SNP:
|
SNP ID:
sf1215351738(Gbrowse)
Chromosome: chr12 Position: 15351738 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 62.44% | 37.56% |
| All Indica | 789 | 87.20% | 12.80% |
| All Japonica | 491 | 17.52% | 82.48% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 370 | 87.03% | 12.97% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 90 | 71.11% | 28.89% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215351738 | T->G | LOC_Os12g26310(LOC_Os12g26310.1) | Synonymous |