Detailed information of SNP:
|
SNP ID:
sf1215356838(Gbrowse)
Chromosome: chr12 Position: 15356838 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 56.65% | 43.35% |
| All Indica | 792 | 82.07% | 17.93% |
| All Japonica | 494 | 11.34% | 88.66% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 84.22% | 15.78% |
| Indica II | 209 | 81.82% | 18.18% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 332 | 2.41% | 97.59% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215356838 | T->G | LOC_Os12g26310(LOC_Os12g26310.1) | Non-Synonymous SNP |