Detailed information of SNP:
|
SNP ID:
sf1215357093(Gbrowse)
Chromosome: chr12 Position: 15357093 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 61.68% | 38.32% |
| All Indica | 785 | 86.11% | 13.89% |
| All Japonica | 492 | 18.29% | 81.71% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 365 | 87.95% | 12.05% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 90 | 67.78% | 32.22% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215357093 | T->C | INTERGENIC | None |