Detailed information of SNP:
|
SNP ID:
sf1215366675(Gbrowse)
Chromosome: chr12 Position: 15366675 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 79.17% | 20.83% |
| All Indica | 784 | 67.98% | 32.02% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 63 | 66.67% | 33.33% |
| Indica I | 372 | 80.65% | 19.35% |
| Indica II | 207 | 43.00% | 57.00% |
| Indica Intermediate | 205 | 70.24% | 29.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215366675 | T->G | INTERGENIC | None |