Detailed information of SNP:
|
SNP ID:
sf1215378789(Gbrowse)
Chromosome: chr12 Position: 15378789 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 65.81% | 34.19% |
| All Indica | 789 | 90.75% | 9.25% |
| All Japonica | 494 | 22.27% | 77.73% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 370 | 94.59% | 5.41% |
| Indica II | 210 | 85.71% | 14.29% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 334 | 8.98% | 91.02% |
| Tropical Japonica | 92 | 64.13% | 35.87% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215378789 | A->C | INTERGENIC | None |