Detailed information of SNP:
|
SNP ID:
sf1215379737(Gbrowse)
Chromosome: chr12 Position: 15379737 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 69.61% | 30.39% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 496 | 23.39% | 76.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 334 | 8.68% | 91.32% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215379737 | T->C | INTERGENIC | None |