Detailed information of SNP:
|
SNP ID:
sf1215385338(Gbrowse)
Chromosome: chr12 Position: 15385338 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 63.25% | 36.75% |
| All Indica | 775 | 86.58% | 13.42% |
| All Japonica | 472 | 19.70% | 80.30% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 359 | 85.79% | 14.21% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 333 | 6.61% | 93.39% |
| Tropical Japonica | 72 | 72.22% | 27.78% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215385338 | A->G | LOC_Os12g26340(LOC_Os12g26340.1) | INTRON |