Detailed information of SNP:
|
SNP ID:
sf1215386885(Gbrowse)
Chromosome: chr12 Position: 15386885 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 91.94% | 8.06% |
| All Indica | 785 | 96.69% | 3.31% |
| All Japonica | 475 | 86.11% | 13.89% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 205 | 97.56% | 2.44% |
| Temperate Japonica | 329 | 92.40% | 7.60% |
| Tropical Japonica | 80 | 66.25% | 33.75% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215386885 | C->T | LOC_Os12g26340(LOC_Os12g26340.1) | Synonymous |