Detailed information of SNP:
|
SNP ID:
sf1215387701(Gbrowse)
Chromosome: chr12 Position: 15387701 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 89.65% | 10.35% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 495 | 84.85% | 15.15% |
| Aus | 62 | 40.32% | 59.68% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 92 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215387701 | A->G | LOC_Os12g26340(LOC_Os12g26340.1) | Synonymous |