Detailed information of SNP:
|
SNP ID:
sf1215394559(Gbrowse)
Chromosome: chr12 Position: 15394559 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 84.41% | 15.59% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 77.26% | 22.74% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215394559 | C->T | INTERGENIC | None |