Detailed information of SNP:
|
SNP ID:
sf1215397385(Gbrowse)
Chromosome: chr12 Position: 15397385 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 62.79% | 37.21% |
| All Indica | 754 | 94.03% | 5.97% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 52 | 76.92% | 23.08% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 171 | 88.30% | 11.70% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215397385 | A->G | INTERGENIC | None |