Detailed information of SNP:
|
SNP ID:
sf1215399189(Gbrowse)
Chromosome: chr12 Position: 15399189 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 68.64% | 31.36% |
| All Indica | 784 | 94.26% | 5.74% |
| All Japonica | 496 | 24.19% | 75.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 364 | 96.15% | 3.85% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 334 | 8.98% | 91.02% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215399189 | C->A | INTERGENIC | None |