Detailed information of SNP:
|
SNP ID:
sf1215400421(Gbrowse)
Chromosome: chr12 Position: 15400421 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 69.94% | 30.06% |
| All Indica | 795 | 95.97% | 4.03% |
| All Japonica | 496 | 23.59% | 76.41% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 334 | 8.68% | 91.32% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215400421 | C->T | INTERGENIC | None |